ncountr

Python pipeline for Nanostring nCounter data analysis.

11 R packages exist for nCounter data, but until now there was no Python option. ncountr fills that gap — parse RCC files, run QC, normalize, and test for differential expression in a single config file or Python API.

Contents

• Installation
  • From PyPI
  • From conda-forge
  • From source
• Quick Start
  • Full pipeline from config
  • Python API
  • Download data from GEO
• Command-Line Interface
• API Reference
  • Top-level functions
  • Data container
  • I/O
  • Core analysis
  • Datasets
  • Plotting
  • Cross-platform validation
• Vignettes

Links

• GitHub
• PyPI

Indices and tables

• Index

• Module Index